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Download Software
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| File |
Size |
Description |
Combiner
1.00
(3-9-05) |
179 kb |
The TMA-Combiner. Combines TMA data, in text tab-delimited
tables (from TMA-Deconvoluter), from one or multiple TMAs,
into a single table.
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Combiner
Documentation
(3-9-05) |
1.52 MB |
Downloadable version of the on-line documentation for the
Combiner, PDF format.
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Stainfinder 1.1
source code
(2-20-05) |
15 kb |
The source code for the CGI program Stainfinder (written in
PERL). This is Version 1.1, which has been updated to work with the
TMA-Combiner. See the update section for details.
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Combiner
Demo Suite
(zipped)
(3-9-05) |
84 kb |
The TMA-Combiner Demo Suite. Contains the
TMA-Combiner 1.00, one sample TMA containing replicate cores, its output file, and
the TreeView-compatible clustered files. Individual components may
be downloaded below.
Note: individual components may be updated more
frequently than this suite. Also, the clustered files were clustered with
Cluster 3.0.
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Downloadable components
of Demo Suite
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Sample TMA
TXT,
OUT,
GTR,
ATR,
CDT
(3-3-05) |
111 kb
total |
A sample TMA dataset, based on the Synovial Sarcoma TMA
dataset. This dataset consists of a single TMA with numerous duplicate cores. Consists of the
following:
TXT = Pre-cluster, uncombined output file
OUT = Combined TMA output, in Pre-cluster format
TreeView files:
GTR = Gene dendrogram
ATR = Array dendrogram
CDT = Clustered output
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Note: if you're looking for other files related to the TMA-Combiner, such as the TMA-Deconvoluter, click
here.
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